That should be fine for the ref/sync setup. The edge of the teeth you use shouldn't matter as the teeth all look to be equal size, but it does shift the timing around. If you find a problem when changing the cam timing, swap the edges. Also note that when swapping the ref edge, you will need to re set the CrIP.
DBW motor characterisation takes a good few hours, and usually it only takes about a week to find the time to do it, but it really depends how busy the engineer that does the characterisation is.
If you can be without it for two weeks, i'll try and make sure it gets back to you. Remember, it has to be given to a motec dealer to be sent here.